Question: any option in somatic sniper to analyze on a region or bed file of regions?
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gravatar for haynes
3.5 years ago by
haynes0
haynes0 wrote:

We generally farm things out to a cluster and give each job a small section of the genome and then combine the outputs. Is there an option for analyzing only a region or a set of regions from a bed file in somaticsniper?

snp genome • 698 views
ADD COMMENTlink modified 3.5 years ago by ernfrid200 • written 3.5 years ago by haynes0
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gravatar for ernfrid
3.5 years ago by
ernfrid200
United States
ernfrid200 wrote:

No, there is not. This other Biostars question and answer provide a work around. Using SomaticSniper to call variants in specific regions?

ADD COMMENTlink written 3.5 years ago by ernfrid200
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