QC of RNA seq reads in R
Hi colleagues, Regarding QC of RNA-Seq , what's the package for RNA seq QC in Rstudio?
there is a RNA-seqlopedia and simple Guide for RNA-seq that area very good refrences to begin (maybe you are already familiar with them).
And you can search for "5.2.4 Filtering/Normalizing Reads by k-mer Coverage" and "Table 5.1 Read Processing Software " that compares some trimmer software in the first one.
In any countries there are good and not-good persons and it does not play very important role in your research, I am also planning to setting up a Bioinformatic-helper website in Farsi, Insha Allah!
Salam! Man pederam Irani ast! Khosh amadid!
It seems as though you might be a beginner. Here is a link to a RNA-seq pipeline i use that has some quality control steps. If you want the imageplot.r function, I can send it to you.
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