compare PacBio Long reads to correct them

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7.5 years ago

midox ▴ 290

Hello, I want to do a comparison of long PacBio reads. I have split the reads in K-mers and with K-mers I'll do the comparison of reads. How I can make the comparison with the reverse complement of reads?

Thanks

PacBio NGS Longreads • 1.3k views

ADD COMMENT • link 7.5 years ago by midox ▴ 290

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There are already many tools available for this purpose, unless you have a revolutionary idea and know very well what you are doing, I would avoid inventing the wheel again.

ADD REPLY • link 7.5 years ago by WouterDeCoster 47k

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can you offer me some tools? and I want to know they do that? if you have explanations thank you.

ADD REPLY • link 7.5 years ago by midox ▴ 290

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Google is awesome: http://lmgtfy.com/?q=pacbio+error+correction

ADD REPLY • link 7.5 years ago by WouterDeCoster 47k

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my question is: do you know error corrections tools that correct long reads using only the long reads?

ADD REPLY • link 7.5 years ago by midox ▴ 290

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Google found this one: http://bioinformatics.oxfordjournals.org/content/early/2016/06/16/bioinformatics.btw321.full