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Question: Viral Genome Annotation / Website
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gravatar for Arash
4.3 years ago by
Arash • 20
Iran, Islamic Republic Of
Arash • 20 wrote:

Hi Colleagues,

What's the best online website or tool for viral genome annotation?

Thanks
rna-seq next-gen • 2.1k views
ADD COMMENT • link •
modified 3.5 years ago by Biostar ♦♦ 20 • written 4.3 years ago by Arash • 20
1

Maybe it is better to edit your question title to "Viral Genome Annotation / Website".

ADD REPLY • link modified 4.3 years ago • written 4.3 years ago by Farbod • 3.3k

Dear Farbod,I changed title.Thanks for your help.

ADD REPLY • link written 4.3 years ago by Arash • 20

Thank you for your attention, it helps people to answer you more accurately and others to find their answer.

Ghorbanat and good luck!

ADD REPLY • link written 4.3 years ago by Farbod • 3.3k

Farbod jan , I did map reads (Case / Control) to Gallus Gallus genome Fasta file (iGenome) by Geneious software.The software produce31 map files.When I want to calculate expression level , but I got the following message : You have to use ref file with mRNA annotation" Please help me to select correct ref file.Thanks.

ADD REPLY • link written 4.3 years ago by Arash • 20
2
gravatar for Farbod
4.3 years ago by
Farbod • 3.3k
Toronto
Farbod • 3.3k wrote:

Hi Arash,

Have you tried VIGOR or NCBI viral genomes ?

and in this post there are some sharing about personal experiences .

~ Best
ADD COMMENT • link modified 4.3 years ago • written 4.3 years ago by Farbod • 3.3k

Thanks,i did with VIGOR

ADD REPLY • link written 4.3 years ago by Arash • 20
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