Question: Viral Genome Annotation / Website
0
gravatar for Arash
3.7 years ago by
Arash20
Iran, Islamic Republic Of
Arash20 wrote:

Hi Colleagues,

What's the best online website or tool for viral genome annotation?

Thanks

rna-seq next-gen • 1.9k views
ADD COMMENTlink modified 3.0 years ago by Biostar ♦♦ 20 • written 3.7 years ago by Arash20
1

Maybe it is better to edit your question title to "Viral Genome Annotation / Website".

ADD REPLYlink modified 3.7 years ago • written 3.7 years ago by Farbod3.3k

Dear Farbod,I changed title.Thanks for your help.

ADD REPLYlink written 3.7 years ago by Arash20

Thank you for your attention, it helps people to answer you more accurately and others to find their answer.

Ghorbanat and good luck!

ADD REPLYlink written 3.7 years ago by Farbod3.3k

Farbod jan , I did map reads (Case / Control) to Gallus Gallus genome Fasta file (iGenome) by Geneious software.The software produce31 map files.When I want to calculate expression level , but I got the following message : You have to use ref file with mRNA annotation" Please help me to select correct ref file.Thanks.

ADD REPLYlink written 3.7 years ago by Arash20
2
gravatar for Farbod
3.7 years ago by
Farbod3.3k
Toronto
Farbod3.3k wrote:

Hi Arash,

Have you tried VIGOR or NCBI viral genomes ?

and in this post there are some sharing about personal experiences .

~ Best

ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by Farbod3.3k

Thanks,i did with VIGOR

ADD REPLYlink written 3.7 years ago by Arash20
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