Question

Viral Genome Annotation / Website

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7.5 years ago

Arash ▴ 30

Hi Colleagues,

What's the best online website or tool for viral genome annotation?

Thanks

next-gen RNA-Seq • 3.1k views

ADD COMMENT • link updated 6.7 years ago by Biostar 20 • written 7.5 years ago by Arash ▴ 30

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Maybe it is better to edit your question title to "Viral Genome Annotation / Website".

ADD REPLY • link 7.5 years ago by Farbod ★ 3.4k

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Dear Farbod,I changed title.Thanks for your help.

ADD REPLY • link 7.5 years ago by Arash ▴ 30

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Thank you for your attention, it helps people to answer you more accurately and others to find their answer.

Ghorbanat and good luck!

ADD REPLY • link 7.5 years ago by Farbod ★ 3.4k

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Farbod jan , I did map reads (Case / Control) to Gallus Gallus genome Fasta file (iGenome) by Geneious software.The software produce31 map files.When I want to calculate expression level , but I got the following message : You have to use ref file with mRNA annotation" Please help me to select correct ref file.Thanks.

ADD REPLY • link 7.5 years ago by Arash ▴ 30

score 2 · Answer 1 · 2016-10-14

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7.5 years ago

Farbod ★ 3.4k

Hi Arash,

Have you tried VIGOR or NCBI viral genomes ?

and in this post there are some sharing about personal experiences .

~ Best

ADD COMMENT • link 7.5 years ago by Farbod ★ 3.4k

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Thanks,i did with VIGOR

ADD REPLY • link 7.5 years ago by Arash ▴ 30