Finding conserved non-coding sequences
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5.1 years ago
R.Blues ▴ 130

Hello everyone,

I am trying to find conserved non-coding sequences between the M. musculus genome and others. I guess this is a very basic issue, but I am not sure about how to proceed, as this is not my field. Is there any recommended way or tool for searching conserved non-coding sequences between different annotated genomes? What do you think?

Sorry for bothering you, and thank you very much for your help. I am a bit clueless, being honest. I cannot find a consensus between the different papers I have read.

next-gen sequence genome • 1.3k views
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This recent thread may be of interest: Finding Ultraconserved elements between human and zebrafish Take a look at the browsers (Ancora and others) mentioned within.

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Thank you very much! :)

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You can check this new paper recently published http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30166-1

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