Obtaing SNP's using TCGA and NCBI
0
0
Entering edit mode
7.5 years ago
Kachibunny • 0

Hi guys, So I have this research task to find all the available SNP's present in a certain type of cancer using the TCGA website, I have been able to find the mutations and the single nucleotide variations present in said cancer by manually searching through the website and performing a query using the cBioportal. I am supposed to find the significance of these variations in the healthy population and their percentages. For this I went to NCBI to manually check on their SNP portal. Unfortunately I could not find matches to any of my chromosome positions. I was wondering if their would be any other database present were I can do this. Or if there is a script/ program I could write using python that would make my life more easier rather than manually searching. Thanks guys!

N.B, I am still kind of learning python and Biopython.

SNP TCGA NCBI biophython • 1.2k views
ADD COMMENT

Login before adding your answer.

Traffic: 1832 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6