Question: Pruning a reference phylogenetic tree according to input species
0
gravatar for rubic
4.1 years ago by
rubic200
United States
rubic200 wrote:

Hi,

Can anyone recommend a database where I can download a reliable mammalian phylogenetic tree which covers at least: armadillo bushbaby chimpanzee cow dog dolphin elephant ferret gibbon gorilla guinea pig human kangaroo rat macaque marmoset megabat microbat mouse mouse lemur olive baboon orangutan pig rat shrew vervet African Green Monkey

taxonomy phylogenetics • 1.1k views
ADD COMMENTlink modified 3.9 years ago by Joseph Hughes2.8k • written 4.1 years ago by rubic200
0
gravatar for Joseph Hughes
3.9 years ago by
Joseph Hughes2.8k
Scotland, UK
Joseph Hughes2.8k wrote:

Try the Common Tree page of the NCBI. You can add each of your species of interest and then save the tree in phylip format. I started doing it for your species at it looks like this:

(
(
'Pan troglodytes':4,
(
'Galago sp.':4,
Lemur:4
)Strepsirrhini:4
)Primates:4,
Dasypodidae:4
)Eutheria:4;

You can then open this up in TreeView or FigTree or ATV.

ADD COMMENTlink written 3.9 years ago by Joseph Hughes2.8k
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