I have lncrna and mrna microarray normalized data in excel format . I want to analyze it for mouse data
by using Heat map volcano plot I have made simple heat map by R and I want to make volcano plot for diff exp genes with interesting gene names I follow codes available online for ggplot2 and devtools but I have not been successful? can any one share some simple code with comments ?
but I want annotated and clustered heat map can any one share code for this from file import to final step (if possible comments to explain code ) third I want to use disease ontology for mouse mrna and mnra and lnrna interaction and pathwas involved I used DOSE R pakage but it for human ?