Question: Volcano plot and heat map
gravatar for Azhar
3.9 years ago by
Azhar50 wrote:

I have lncrna and mrna microarray normalized data in excel format . I want to analyze it for mouse data

by using Heat map volcano plot I have made simple heat map by R and I want to make volcano plot for diff exp genes with interesting gene names I follow codes available online for ggplot2 and devtools but I have not been successful? can any one share some simple code with comments ?

but I want annotated and clustered heat map can any one share code for this from file import to final step (if possible comments to explain code ) third I want to use disease ontology for mouse mrna and mnra and lnrna interaction and pathwas involved I used DOSE R pakage but it for human ?


rna-seq • 2.0k views
ADD COMMENTlink modified 3.9 years ago by Biostar ♦♦ 20 • written 3.9 years ago by Azhar50

Please show what you tried and what didn't work and what the results were.

ADD REPLYlink modified 3.9 years ago • written 3.9 years ago by WouterDeCoster44k
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