Question: Identifiy new miRNA
0
gravatar for nasromer2191989
4.1 years ago by
nasromer219198920 wrote:

Hi everybody I am looking for the informatics tool to identify new miRNA that associated with specific cancer by use the previous known miRNA found in different expression in that cancer?

which tool could I use for example to build a model than scan that model against the database to pick up based in sequence information?

Anyone have advise for that idea thanks

sequence • 925 views
ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by nasromer219198920
3

Please use a more informative title for your posts and follow up on your earlier questions!

ADD REPLYlink modified 4.1 years ago • written 4.1 years ago by WouterDeCoster44k

Hi WouterDeCoster

like what information do you need

Thanks

ADD REPLYlink written 4.1 years ago by nasromer219198920

1) The title of your post contains just "need the approach": be more informative. People browsing this forum need to know what your post is about by the title.

2) You have asked a few question already, on which many people have contributed to help you. It's only fair that you up vote helpful answers and mark a post as accepted if the answer resolved your question.

ADD REPLYlink written 4.1 years ago by WouterDeCoster44k

Dear WouterDeCoster

Really sorry

I do not put the question in right format or less informative. I have collect miRNA that linked to one cancer. I was planing to use HMMER to build model then predict new miRNA related to same cancer . Since HMMER is not recommended for nucleotide so I hope to find tool that could do predication by use the known sequence of miRNA.

THANKS

ADD REPLYlink written 4.1 years ago by nasromer219198920
2

You asked a similar question here . Was it not answered??

ADD REPLYlink written 4.1 years ago by Prasad1.6k

Dear Prasad

Really sorry

I do not put the question in right format or less informative. I have collect miRNA that linked to one cancer. I was planing to use HMMER to build model then predict new miRNA related to same cancer . Since HMMER is not recommended for nucleotide so I hope to find tool that could do predication by use the known sequence of miRNA.

THANKS

ADD REPLYlink written 4.1 years ago by nasromer219198920
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