Question: Tools for categorize COG/KOG list
gravatar for pbigbig
3.9 years ago by
United States
pbigbig210 wrote:

Hi everyone,

I have a quite basic question concerning Cluster of Orthologs (COGs). I just have obtained Trinotate annotation for my transcriptome with COGs assignments, now I would like to build graph of COGs number belonged to each functional category (25 categories, which are often designated from A to Z), which tools could help me categorize my COGs list? By the way, is there any similar approach for the eggNOG output of Trinotate?

Thank you very much !

cogs kogs • 3.2k views
ADD COMMENTlink modified 3.9 years ago by Farbod3.3k • written 3.9 years ago by pbigbig210
gravatar for Farbod
3.9 years ago by
Farbod3.3k wrote:

Dear phuongbigbig, Hi

You can use WebMGA for your COG assignment and manipulate the R script in this post for your bar chart (the image of chart is shown below) .

~ Best

enter image description here

ADD COMMENTlink written 3.9 years ago by Farbod3.3k

Thank you very much for your suggestion !

ADD REPLYlink written 3.9 years ago by pbigbig210
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