Question: Tools for categorize COG/KOG list
0
gravatar for pbigbig
2.4 years ago by
pbigbig190
United States
pbigbig190 wrote:

Hi everyone,

I have a quite basic question concerning Cluster of Orthologs (COGs). I just have obtained Trinotate annotation for my transcriptome with COGs assignments, now I would like to build graph of COGs number belonged to each functional category (25 categories, which are often designated from A to Z), which tools could help me categorize my COGs list? By the way, is there any similar approach for the eggNOG output of Trinotate?

Thank you very much !

cogs kogs • 1.9k views
ADD COMMENTlink modified 2.4 years ago by Farbod3.2k • written 2.4 years ago by pbigbig190
5
gravatar for Farbod
2.4 years ago by
Farbod3.2k
Toronto
Farbod3.2k wrote:

Dear phuongbigbig, Hi

You can use WebMGA for your COG assignment and manipulate the R script in this post for your bar chart (the image of chart is shown below) .

~ Best

enter image description here

ADD COMMENTlink written 2.4 years ago by Farbod3.2k
1

Thank you very much for your suggestion !

ADD REPLYlink written 2.4 years ago by pbigbig190
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