Tools for categorize COG/KOG list

Question

[pbigbig]

Hi everyone,

I have a quite basic question concerning Cluster of Orthologs (COGs). I just have obtained Trinotate annotation for my transcriptome with COGs assignments, now I would like to build graph of COGs number belonged to each functional category (25 categories, which are often designated from A to Z), which tools could help me categorize my COGs list? By the way, is there any similar approach for the eggNOG output of Trinotate?

Thank you very much !

Answer 1

[Farbod]

Dear phuongbigbig, Hi

You can use WebMGA for your COG assignment and manipulate the R script in this post for your bar chart (the image of chart is shown below) .

~ Best

[pbigbig]

Thank you very much for your suggestion !