this might be a repeat question, couldnt find a better solution. I am working on a aromatic rice genome (~500MB genome). got the illumina hiseq data (~300 M reads of 150*2). So far i have tried Abyss, IDBA-UD, platanus, SOAP and MaSuRCA. So far IDBA-UD (1.29M scaffolds, N50- 1857, 598MB) has given better result compared to rest. MaSuRCA which performed well(paper), is not working in my case (Not necessarily has to). Here my question is are there any other tools which i could use[tried few from Assemblathon2]
Any suggestions are appreciated.