Question: Annotating transposons in bacterial genomes
0
gravatar for wanderingstefan
3.4 years ago by
wanderingstefan30 wrote:

Hey all!

I have a database with bacterial sequence data that I want to annotate for transposons with respect to antibiotic resistance. After researching the topic, I am more confused as before, as there seem to be a great multitude of divergent transposon families, and I do not know where to start.

Does somebody know any good open source models or tools that could be used for transposon annotation? I know that Pfam is using HMMs for transposon identification, but I do not know how to access those. I have found tools like OASIS or ISFinder for IS annotation, but am unsure how comprehensive those databases are.

Any suggestions?

ADD COMMENTlink written 3.4 years ago by wanderingstefan30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 789 users visited in the last hour