Question: construct a co-expression network of coding-noncoding genes
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gravatar for elhamdallalbashi
2.5 years ago by
elhamdallalbashi10 wrote:

Hi All, I have datasets derived from RNAseq experiments,I did differential expression for coding and lncoding RNA. I want to construct a co-expression network of these coding-noncoding genes,what should I do?Can you recommend software?

I should construct a co-expression network for each experiment OR I can select special genes and lncRNA from all of experiments(I mean after doing meta analysis ,set filter and choose key genes) for constructing a co-expression network ?

rna-seq network • 905 views
ADD COMMENTlink written 2.5 years ago by elhamdallalbashi10

try WGCNA

ADD REPLYlink written 2.5 years ago by Prasad1.5k
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