Finding activation or repression relationships between transcription factors and target genes in human

Question

[nazaninhoseinkhan]

Dear all,

I am trying to find transcription factors and the type of regulation(activation or inhibition) for a list of 240 genes.

I used TRRUST database for this purpose, but I could only find this information for 35 genes out of 240.

Is there any other reliable database I can use?

Thank u in advance

Nazanin

Answer 1

[natasha.sernova]

See other sites as well:

TFactS Manual

http://www.tfacts.org/TFactS-new/TFactS-v2/index1.html

Identification of interacting transcription factors regulating tissue gene expression in human

http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-11-49

PAZAR-site with many links inside

http://www.pazar.info/

The interplay between transcription factors and microRNAs in genome-scale regulatory networks

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118512/

See the right panel when you are inside your question, you will find a lot of other useful links.