Question: Extract PDB file names from KEGG when Gene name is known
gravatar for DanielC
3.6 years ago by
DanielC120 wrote:

Dear All,

I am looking for a standalone way to extract pdbs from KEGG when I have the gene name.

For instance, I know "HRAS" gene name. I also know it has pdbs associated to it:

Can you please help me know how can I download these pdb file names from KEGG using the gene name?

Thanks much!

kegg • 1.0k views
ADD COMMENTlink modified 3.4 years ago by Biostar ♦♦ 20 • written 3.6 years ago by DanielC120

One way was was described in this post:

How Can I Extract Only Specific Structures From Pdb

This post below may also be helpful:

Gene Pathway Association File For Kegg

Since you need KEGG-pathway for your gene, it was described here:

Find Kegg Pathway That Contain Certain Genes

ADD REPLYlink modified 3.4 years ago • written 3.4 years ago by natasha.sernova3.7k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1060 users visited in the last hour