Extract PDB file names from KEGG when Gene name is known
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7.5 years ago
DanielC ▴ 170

Dear All,

I am looking for a standalone way to extract pdbs from KEGG when I have the gene name.

For instance, I know "HRAS" gene name. I also know it has pdbs associated to it:

http://www.genome.jp/dbget-bin/www_bget?hsa:3265

Can you please help me know how can I download these pdb file names from KEGG using the gene name?

Thanks much!

KEGG • 1.7k views
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One way was was described in this post:

How Can I Extract Only Specific Structures From Pdb

This post below may also be helpful:

Gene Pathway Association File For Kegg

Since you need KEGG-pathway for your gene, it was described here:

Find Kegg Pathway That Contain Certain Genes

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