Question: Extract PDB file names from KEGG when Gene name is known
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gravatar for DanielC
2.6 years ago by
DanielC80
Canada
DanielC80 wrote:

Dear All,

I am looking for a standalone way to extract pdbs from KEGG when I have the gene name.

For instance, I know "HRAS" gene name. I also know it has pdbs associated to it:

http://www.genome.jp/dbget-bin/www_bget?hsa:3265

Can you please help me know how can I download these pdb file names from KEGG using the gene name?

Thanks much!

kegg • 780 views
ADD COMMENTlink modified 2.4 years ago by Biostar ♦♦ 20 • written 2.6 years ago by DanielC80

One way was was described in this post:

How Can I Extract Only Specific Structures From Pdb

This post below may also be helpful:

Gene Pathway Association File For Kegg

Since you need KEGG-pathway for your gene, it was described here:

Find Kegg Pathway That Contain Certain Genes

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by natasha.sernova3.4k
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