ChipSeeker error in enrichPathway and seq2gene
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4.5 years ago
GK1610 ▴ 90

I ran annotation of my peak file which went well but enrichment is giving me this error.

pathway1 <- enrichPathway(as.data.frame(peakAnno)$geneId) Error in row.names<-.data.frame(*tmp*, value = c(NA_character_, NA_character_, : duplicate 'row.names' are not allowed In addition: There were 50 or more warnings (use warnings() to see the first 50)

the I tried seq2gene and it gives this error

gene <- seq2gene(peaks, tssRegion = c(-1000, 1000), flankDistance = 3000, TxDb=txdb) Error in .Method(..., deparse.level = deparse.level) : number of columns for arg 2 do not match those of first arg

ChIP-Seq • 1.6k views
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answered in https://github.com/GuangchuangYu/ChIPseeker/issues/42.

  1. you need to tag your post with chipseeker then I can receive email notification.
  2. you are welcome to post in biostars (prefer for question) or github (for bug report), but not duplicated.
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