Question: ChipSeeker error in enrichPathway and seq2gene
0
gravatar for GK1610
2.7 years ago by
GK161060
United States
GK161060 wrote:

I ran annotation of my peak file which went well but enrichment is giving me this error.

pathway1 <- enrichPathway(as.data.frame(peakAnno)$geneId) Error in row.names<-.data.frame(*tmp*, value = c(NA_character_, NA_character_, : duplicate 'row.names' are not allowed In addition: There were 50 or more warnings (use warnings() to see the first 50)

the I tried seq2gene and it gives this error

gene <- seq2gene(peaks, tssRegion = c(-1000, 1000), flankDistance = 3000, TxDb=txdb) Error in .Method(..., deparse.level = deparse.level) : number of columns for arg 2 do not match those of first arg

chip-seq • 1.0k views
ADD COMMENTlink modified 2.6 years ago by Biostar ♦♦ 20 • written 2.7 years ago by GK161060
1

answered in https://github.com/GuangchuangYu/ChIPseeker/issues/42.

  1. you need to tag your post with chipseeker then I can receive email notification.
  2. you are welcome to post in biostars (prefer for question) or github (for bug report), but not duplicated.
ADD REPLYlink written 2.7 years ago by Guangchuang Yu2.2k
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