How can I use Samtools to map coverage distribution?
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7.5 years ago
SaltedPork ▴ 170

I want to use Samtools to map copverage distribution and retrieve the regions with the highest coverage and view it in IGV as a track. I've found the samtools stats -c that outputs coverage statistics. Is there another way? Also, is bedtools an option?

samtools coverage distribution • 3.4k views
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