How to align motif lists from different ChIP-seq data to search for re-occoring motifs in different dataset?

Question

[henrique.marques.souza]

I am looking for a tool or method to find motifs that are enriched across different ChIP-seq data set for the same transcription factor. There is no need for genomic coordinate, simply identifying what are the motifs present (with % of similarity, if possible) in different data set.

[Devon Ryan]

Have you tried MEME-ChIP?