Question: How to align motif lists from different ChIP-seq data to search for re-occoring motifs in different dataset?
gravatar for henrique.marques.souza
3.6 years ago by

I am looking for a tool or method to find motifs that are enriched across different ChIP-seq data set for the same transcription factor. There is no need for genomic coordinate, simply identifying what are the motifs present (with % of similarity, if possible) in different data set.

motif alignment chip-seq • 970 views
ADD COMMENTlink written 3.6 years ago by henrique.marques.souza0

Have you tried MEME-ChIP?

ADD REPLYlink written 3.6 years ago by Devon Ryan95k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1398 users visited in the last hour