Question: How to align motif lists from different ChIP-seq data to search for re-occoring motifs in different dataset?
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gravatar for henrique.marques.souza
3.6 years ago by

I am looking for a tool or method to find motifs that are enriched across different ChIP-seq data set for the same transcription factor. There is no need for genomic coordinate, simply identifying what are the motifs present (with % of similarity, if possible) in different data set.

motif alignment chip-seq • 970 views
ADD COMMENTlink written 3.6 years ago by henrique.marques.souza0

Have you tried MEME-ChIP?

ADD REPLYlink written 3.6 years ago by Devon Ryan95k
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