Question: Do we have any other de novo assembly approaches than Graph based (OLC and De bruijn), Seed Extension(examples:SSAKE,VCAKE..) and String graph based?
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3.9 years ago by
saranpons370
saranpons370 wrote:

Hello All, I know that we have the following de novo assembly approaches for assembling the reads from NGS technology. Taken the list from this paper (http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6616523)

           1) Graph based (Overlap-Layout-Consensus, De Bruijn Graph)
           2) Seed Extension (Some examples: SSAKE, VCAKE)
           3) String graph (Efficient construction of an assembly string graph using the FM-index)

            Do we have any other approaches besides the listed above approaches?

             Thanks in advance.
assembly de novo • 1.0k views
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