Varscan mpileup2snp coverage filter
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Entering edit mode
7.5 years ago
AW ▴ 350

Dear all,

Does anyone know what the --min-coverage threshold in mpileup2snp is filtering on? Is it DP= Quality Read Depth of bases with Phred score >= 20 or SDP= Raw Read Depth as reported by SAMtools?

Thanks

varscan mpileup2snp • 1.4k views
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