Question: Tools for classifying human and mouse reads for WGS data
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gravatar for sgujja
2.3 years ago by
sgujja20
United States
sgujja20 wrote:

Hello, I am looking for suggestions on using tools for classifying human and mouse reads for PDX WGS data. Xenome for RNA-Seq works well.Any input on tools designed for DNA-Seq? Thanks

pdx wgs • 617 views
ADD COMMENTlink modified 2.3 years ago by Ron870 • written 2.3 years ago by sgujja20
0
gravatar for Ron
2.3 years ago by
Ron870
United States
Ron870 wrote:

https://sourceforge.net/projects/bbmap/

BBSplit will map the reads simultaneously to multiple references, and output in multiple files, one per reference.

Refer to this post: Tool to separate human and mouse rna seq reads

ADD COMMENTlink modified 2.3 years ago by genomax62k • written 2.3 years ago by Ron870
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