Question: Tools for classifying human and mouse reads for WGS data
0
gravatar for sgujja
2.7 years ago by
sgujja20
United States
sgujja20 wrote:

Hello, I am looking for suggestions on using tools for classifying human and mouse reads for PDX WGS data. Xenome for RNA-Seq works well.Any input on tools designed for DNA-Seq? Thanks

pdx wgs • 692 views
ADD COMMENTlink modified 2.7 years ago by Ron960 • written 2.7 years ago by sgujja20
0
gravatar for Ron
2.7 years ago by
Ron960
United States
Ron960 wrote:

https://sourceforge.net/projects/bbmap/

BBSplit will map the reads simultaneously to multiple references, and output in multiple files, one per reference.

Refer to this post: Tool to separate human and mouse rna seq reads

ADD COMMENTlink modified 2.7 years ago by genomax69k • written 2.7 years ago by Ron960
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1496 users visited in the last hour