Question: Enhancer regions for rn5
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gravatar for bioinfc37
21 months ago by
bioinfc3730
bioinfc3730 wrote:

Seeking a reproducible database for rn5 enhancer regions or a protocol that I could use as a reference -- any leads?

Thanks in advance!

rn5 enhancer • 548 views
ADD COMMENTlink written 21 months ago by bioinfc3730
1

If you have access to raw / or RPKM normalized bedGraph files for DNase, H3K4me1, H3K4me3, and H3K27Ac then you can use my tool CIPHER to predict potential enhancer elements. If you don't have access to these ChIP-seq/DNase-seq datasets and you can't find them for your preferred cell line in ENCODE / Roadmap Epigenetics then you're best bet is to look into a database like EnhancerAtlas.

Goodluck!

ADD REPLYlink modified 21 months ago • written 21 months ago by Sinji2.7k
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