Question: (Closed) Enhancer regions for rn5
0
gravatar for bioinfc37
4.0 years ago by
bioinfc3730
bioinfc3730 wrote:

Seeking a reproducible database for rn5 enhancer regions or a protocol that I could use as a reference -- any leads?

Thanks in advance!

rn5 enhancer • 841 views
ADD COMMENTlink modified 10 months ago by Biostar ♦♦ 20 • written 4.0 years ago by bioinfc3730
1

If you have access to raw / or RPKM normalized bedGraph files for DNase, H3K4me1, H3K4me3, and H3K27Ac then you can use my tool CIPHER to predict potential enhancer elements. If you don't have access to these ChIP-seq/DNase-seq datasets and you can't find them for your preferred cell line in ENCODE / Roadmap Epigenetics then you're best bet is to look into a database like EnhancerAtlas.

Goodluck!

ADD REPLYlink modified 4.0 years ago • written 4.0 years ago by Sinji3.0k

Hello bioinfc37!

We believe that this post does not fit the main topic of this site.

Unspecific. OP never followed up.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 10 months ago by ATpoint40k
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