getting a pdb format for dna

Question

[manaswiniparija3]

i want to do docking of a genes response element with a ligand . so how to do this docking with autodock tool and where will i get pdb format of a dna sequence to use it in autodock.

[Jean-Karim Heriche]

Related post that may be of help

Answer 1

[cschu181]

The make-na server (http://structure.usc.edu/make-na/server.html) will allow you to generate DNA structures in PDB format that you can use for docking.

[manaswiniparija3]

thank u verymuch sir/madam