Assume I want to reproduce the results from an encode exeriment (e.g. this: https://www.encodeproject.org/experiments/ENCSR000EIY/), is that possible?
I know it is possible using dnanexus.com service, but is this possible to do it without using dnanexus?
It seems that the data from each experiment is generated by running an encode pipeline (e.g. https://github.com/ENCODE-DCC/dnase_pipeline), but how do I run this pipeline for one specific experiment?