genotype frequency data
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6.0 years ago

There are a lot of tools out there to annotate variation and get allele frequencies from different project data, but can anyone suggest a method (not a browser) or a tool to get genotype frequencies/counts for variants from projects like 1000g, UK10k or aggregation consortia like gnomAD and Kaviar?

genotype gnomad frequency • 1.4k views
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ANNOVAR should be able to get you the minor allele frequency from the studies that are part of its database

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true, but i am looking for genotype frequencies

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My apologies I missed that some how.

True I can think of no annotator that spits out genotype frequencies.

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6.0 years ago
Ron ★ 1.1k

Check this post : Genotype Frequencies Calculation

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