Hi, I want to do carry out SNP detection on genomic data which has to be aligned with an in-house tool. I have to check how this tool performs with respect to other alignment tools, and whether it improves snp detection.
Any ideas wherefrom to download the genomic data (fastq), which I can then align and check for SNPs? Is it possible to find NGS data used in publications, so that I can compare if there is any difference in the detection SNPs with our tools vs existing tools?
I am new to genomics - any suggestion will be helpful.