I am very beginner in this domain and I am looking for some help.
So I have made a multiple alignment with MAFFT. I would like know to infer a philogenetic tree.
I heard about RaXML and I plan to use it.
1) However, which model should I use ? Is there a program that can help me to choose the model ?
2) What are the main differences with Bayes method ?
Thanks a lot.