What is "^A" in NR database?
1
0
Entering edit mode
7.4 years ago

I have download the NR database from http://www.matrixscience.com/help/seq_db_setup_nr_gi.html And I less the file I have download.

>gi|66816243|ref|XP_642131.1| hypothetical protein DDB_G0277827 [Dictyostelium discoideum AX4]^Agi|1705556|sp|P54670.1|CAF1_DICDI RecName: Full=Calfumirin-1; Short=CAF-1^Agi|793761|dbj|BAA06266.1| calfumirin-1 [Dictyostelium discoideum AX2]^Agi|60470106|gb|EAL68086.1| hypothetical protein DDB_G0277827 [Dictyostelium discoideum AX4]
MASTQNIVEEVQKMLDTYDTNKDGEITKAEAVEYFKGKKAFNPERSAIYLFQVYDKDNDGKITIKELAGDIDFDKALKEY
KEKQAKSKQQEAEVEEDIEAFILRHNKDDNTDITKDELIQGFKETGAKDPEKSANFILTEMDTNKDGTITVKELRVYYQK
VQKLLNPDQ

What is "^A".

If I format database by BLAST, will it influences?

RNA-Seq • 1.3k views
ADD COMMENT
2
Entering edit mode
7.4 years ago

The website where you downloaded this from says:

If an entry in nr represents multiple source database entries, the Fasta title lines are concatenated together with CTRL+A as the delimiter.

^A is same as CTRL+A. I don't think it will influence making a blast database as I think they use the same type of delimiter.

ADD COMMENT

Login before adding your answer.

Traffic: 2352 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6