Hi, I have data for a drug on three bacteria species at genomic level. In the example below, gene aa is sensitive to the drug in speceis1 while not in Species2 & 3 (1=sensitive, 0=resistant). I wanted to know if there is any correlation of drug response between these species?
Gene Species1 Species2 Species3
aa 1 0 0
ab 1 1 0
ac 1 0 0
ad 1 0 1
ae 0 1 0
af 0 0 1
Thanks a lot.
Hi Michael, Thanks a lot for your response. I am sorry for providing incomplete information. The example given is just a representative of my data. The experiment was performed on individual gene knockout strains and there are 123 different genes (and orthologs in other species) which showed either resistance or sensitivity across three species. I converted the result into binary data (1 for resistance and 0 for sensitive) to find a correlation. Just looking at my data, I could also see there is no correlation but I am looking for a statistical interpretation. I provided a bigger example of my data below. Thanks again.