Question: mapping file for KEGG IDs
0
gravatar for Quak
2.3 years ago by
Quak290
United States
Quak290 wrote:

I wonder if there exists any table, mapping kegg entries e.g K01952 to its definition / pathway and modules ? e.g http://www.genome.jp/dbget-bin/www_bget?ko:K01952

kegg • 1.0k views
ADD COMMENTlink modified 2.3 years ago by 5heikki8.3k • written 2.3 years ago by Quak290
2
gravatar for 5heikki
2.3 years ago by
5heikki8.3k
Finland
5heikki8.3k wrote:

Pathway - definition

curl http://rest.kegg.jp/list/pathway

KO - definition

curl http://rest.kegg.jp/list/ko

Module - KO

curl http://rest.kegg.jp/link/ko/module

Pathway - KO

curl http://rest.kegg.jp/link/ko/pathway

See KEGG API

You can easily build any kind of mapfile from these by applying join and sort

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by 5heikki8.3k
0
gravatar for poojasethiya
2.3 years ago by
poojasethiya80
poojasethiya80 wrote:

If you want the entries in table format for your gene list (id's : Entrez, Ensembl, Uniprot) you can use kobas. http://kobas.cbi.pku.edu.cn/anno_iden.php

~Pooja

ADD COMMENTlink written 2.3 years ago by poojasethiya80

Thanks but I have a KEGG ID list instead of a gene list.

ADD REPLYlink written 2.3 years ago by Quak290
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