Question: where to download genepattern zip file
0
gravatar for camelbbs
2.4 years ago by
camelbbs650
China
camelbbs650 wrote:

Just want to ask if anyone have experience in installing the GenePattern? Seems the online module repository is down. And I don't know where to find the downloadable zip files. Can anyone provide the link?

Thanks a lot!

genepattern • 1.0k views
ADD COMMENTlink modified 2.3 years ago by alaindomissy160 • written 2.4 years ago by camelbbs650

The software download page for GenePattern is available. You must be experiencing some local restrictions on accessing the page.

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by genomax65k

Thanks. But I mean I cannot get the modules online. The download page is down.

ADD REPLYlink written 2.4 years ago by camelbbs650

Looking at the GenePattern install instructions it may mean that the computer you installed GenePattern on is not allowed to directly connect/download software from network.

ADD REPLYlink written 2.4 years ago by genomax65k
1
gravatar for alaindomissy
2.3 years ago by
alaindomissy160
alaindomissy160 wrote:

You should be able to resolve the problem with installing modules from url by making some hard-coding changes to the following file: GenePatternServer/genepattern.properties

Replace all occurences of www.broadinstitute.org with software.broadinstitute.org

GenePattern core development team relocated physically and also changed (and broke!) some of their web url locations. This is not (yet) documented anywhere. There should be a corrective PR coming up soon on their github repo.

ADD COMMENTlink written 2.3 years ago by alaindomissy160
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