Hi all. I have been trying to run Pbalign with bax.h5 files from my PacBio data. I am facing this problem:
2016-12-04 08:45:37,051 [INFO] FilterService: Filter alignments using samFilter. 2016-12-04 08:45:37,067 [ERROR] FilterService returned a non-zero exit status. /bin/sh: 1: samFilter: not found
However, samFilter is available in my system and accessible to all.
Can anybody please suggest how to over ride this problem? I need the solution urgently.