Question: Help Needed with Pbalign SamFIlter
0
gravatar for anniiee9
6 months ago by
anniiee90
anniiee90 wrote:

Hi all. I have been trying to run Pbalign with bax.h5 files from my PacBio data. I am facing this problem:

2016-12-04 08:45:37,051 [INFO] FilterService: Filter alignments using samFilter. 2016-12-04 08:45:37,067 [ERROR] FilterService returned a non-zero exit status. /bin/sh: 1: samFilter: not found

However, samFilter is available in my system and accessible to all.

Can anybody please suggest how to over ride this problem? I need the solution urgently.

samfilter pacbio pbalign quiver • 335 views
ADD COMMENTlink modified 6 months ago by Biostar ♦♦ 20 • written 6 months ago by anniiee90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 484 users visited in the last hour