Question: Help Needed with Pbalign SamFIlter
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gravatar for anniiee9
11 weeks ago by
anniiee90
anniiee90 wrote:

Hi all. I have been trying to run Pbalign with bax.h5 files from my PacBio data. I am facing this problem:

2016-12-04 08:45:37,051 [INFO] FilterService: Filter alignments using samFilter. 2016-12-04 08:45:37,067 [ERROR] FilterService returned a non-zero exit status. /bin/sh: 1: samFilter: not found

However, samFilter is available in my system and accessible to all.

Can anybody please suggest how to over ride this problem? I need the solution urgently.

samfilter pacbio pbalign quiver • 243 views
ADD COMMENTlink modified 9 weeks ago by Biostar ♦♦ 10 • written 11 weeks ago by anniiee90
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