I would like to know if the jobs are stopped because they're overruning the SGE server where i'm working on limit time, the results generated are conserved and not overwrited ?
To be more precise: If I re-run the same job, will OMA take in count that some results are still here, and will continue to the next step ? I assume that from the sentence seen in the tutorial:
" Adding/Updating new genomes
It is possible to add new genomes without recomputing the all-against-all phase for pre-existing genomes. To do so, simply add the new fasta databases in the DB/ directory and re-run OMA. Likewise, it is possible to update a genome by deleting the old genome from the DB/ directory, and adding a new file. Important: to avoid clashes with previously computed results, the updated genome must use a different filename than any previously computed result."
But I want to be sure !
Thanks a lot !