Entering edit mode
7.4 years ago
1769mkc
★
1.2k
I'm using the tuxedo protocol for RNA-Seq data analysis the analysis is complete but it seems there are issues im not sure
CuffSet instance with:
4 samples
47983 genes
309126 isoforms
123858 TSS
0 CDS
287898 promoters
743148 splicing
0 relCDS
The CDS shouldn;t be zero isnt it?
Other issues is cummeRbund is not detecting the replicates I have 4 sample like
'Sample 1 ,Sample 2(replicate), Sample 3,Sample 4(replicate)'
So any suggestion where am I doing or going wrong ?
