Question: Get the Protein-Accession - GO-ids mapping for every Protein in e.coli K12
gravatar for Benni
2.5 years ago by
Benni30 wrote:

I only found the annotation file for e.coli from EcoCyc: "gene_association.ecocyc" But I can´t open the file. I just need a simple text file, that maps ProteinAccession to all GO-ids.

SOLVED: I just renamed the file to .gaf since it already is in the .gaf format.

go protein gene ontology • 949 views
ADD COMMENTlink modified 2.5 years ago by Elisabeth Gasteiger1.6k • written 2.5 years ago by Benni30
gravatar for Elisabeth Gasteiger
2.5 years ago by
Elisabeth Gasteiger1.6k wrote:

Glad you managed to get your data. Alternatively, you could also query UniProtKB, e.g.

and then customize your output to include a column for GO identifers, optionally remove all other columns, and download the file in tab-separated format (

This results in (preview of first 10 entries in the list):[83333]%22&fil=&limit=10&force=no&preview=true&format=tab&columns=id,go-id

ADD COMMENTlink written 2.5 years ago by Elisabeth Gasteiger1.6k
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