I am using Fastx tool to quality filter my data. The command I'm using is given below-
fastq_quality_filter -v -q 20 -p 70 -i /home/desktop/folder_name/2_R1.fastq/ /home/desktop/folder_name/2_R2.fastq -o /home/Desktop/folder_name/tomato2.txt
What parameters should I choose, and where am I going wrong? I'm not able to configure.
This is the error I'm getting-
/var/spool/PBS/mom_priv/jobs/183464.login1.SC: line 14: module: command not found /var/spool/PBS/mom_priv/jobs/183464.login1.SC: line 16: fastq_quality_filter: command not found
Please help me with this. Thanks in advance!