Question: Clustering sequences based on identity, but ignoring a particular region on the sequences
0
gravatar for Mac
2.7 years ago by
Mac10
South Africa
Mac10 wrote:

I would like to cluster sequences based on 99% identity, and have been using usearch. However, I would like the clustering process to ignore a particular region on the nucleotide sequences that is very variable. What tool can I use to do this clustering where I can specify it to ignore nucleotide/amino acid differences in a certain region?

cd-hit next-gen usearch • 652 views
ADD COMMENTlink written 2.7 years ago by Mac10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1829 users visited in the last hour