Clustering sequences based on identity, but ignoring a particular region on the sequences
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4.9 years ago
Mac ▴ 10

I would like to cluster sequences based on 99% identity, and have been using usearch. However, I would like the clustering process to ignore a particular region on the nucleotide sequences that is very variable. What tool can I use to do this clustering where I can specify it to ignore nucleotide/amino acid differences in a certain region?

next-gen usearch cd-hit • 1.0k views
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