Repeat masker bed file
1
4
Entering edit mode
7.3 years ago
jh ▴ 40

Hello,

Does anyone know where I can find a bed file including repeat mask regions for the human genome?

Thanks!

genome • 13k views
ADD COMMENT
13
Entering edit mode
7.3 years ago
GenoMax 141k

Use UCSC Table browser. "Repeats" group and "Repeatmasker" track. Select output format as BED.

ADD COMMENT
0
Entering edit mode

After I select the output format as BED and hit the 'get output' button. A second page of options relating to the BED file will appear. There is an option to Create one BED record per 1) Whole Gene; 2) Upstream by 200 bases; 3) Downstream by 200 bases. Should I choose option 1? Thanks.

ADD REPLY
0
Entering edit mode

Depends on if you are only interested in regions with gene.

ADD REPLY

Login before adding your answer.

Traffic: 2773 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6