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7.3 years ago
alim.hcu
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20
Dear,
I have two file. In one there is start and end position. I want to use these start and end position to extract information in another txt file( start and end position in column 2)
File 1 format
CcLG11:226909-229893
CcLG11:243545-252363
CcLG11:468465-470135
CcLG11:599949-606369
CcLG11:702863-705567
CcLG11:732897-733190
CcLG11:777699-778472
CcLG11:836376-837089
CcLG11:863645-868932
CcLG11:885839-889335
CcLG11:894027-895799
File2 format
CcLG01 114 - CG 0.000 2.00 0 2 0 0 0.000 0.658
CcLG01 136 - CG 0.000 1.00 0 1 0 0 0.000 0.793
CcLG01 243 - CG 0.000 1.00 0 1 0 0 0.000 0.793
CcLG01 1272 + CG 0.000 1.00 0 1 1 1 0.000 0.793
CcLG01 1273 - CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1277 + CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1278 - CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1281 + CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1282 - CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1287 + CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1288 - CG 1.000 1.00 1 1 1 1 0.207 1.000
CcLG01 1296 + CG 1.000 1.00 1 1 0 0 0.207 1.000
CcLG01 1327 + CG 1.000 3.00 3 3 10 10 0.438 1.000
CcLG01 1328 - CG 1.000 12.00 12 12 3 3 0.757 1.000
CcLG01 1347 + CG 0.792 7.58 6 8 36 38 0.438 0.949
CcLG01 1348 - CG 1.000 38.00 38 38 8 8 0.908 1.000
CcLG01 1351 + CG 0.891 6.74 6 8 32 38 0.513 0.984
CcLG01 1352 - CG 1.000 28.50 32 38 6 8 0.881 1.000
CcLG01 1359 + CG 1.000 8.00 8 8 38 38 0.676 1.000