Hello, I am using Pbalign for aligning pacbio reads in PacBio assembly correction where Blasr and samFilter is used by pbalign in the background. Blasr is running properly but samFilter is giving an error though Blasr and samFilter are in the same working directory as pbalign. Samfilter is giving an error of segmentation fault (Enough space is available in the working directory). Here is an error log:
2016-12-23 16:04:31,997 [INFO] pbalign version: 0.2.0.141024 2016-12-23 16:04:37,259 [INFO] BlasrService: Align reads to references using /media/9759e2b0-edca-4aaa-a141-110bc7765ca3/Program/_SMART/smrtanalysis/current/analysis/bin/blasr. 2016-12-26 02:58:12,925 [INFO] FilterService: Filter alignments using /media/9759e2b0-edca-4aaa-a141-110bc7765ca3/Program/_SMART/smrtanalysis/current/analysis/bin/samFilter. 2016-12-26 02:58:15,764 [ERROR] FilterService returned a non-zero exit status. Segmentation fault (core dumped)
Please help us to solve this problem. Need help urgently.
