Question: How should I generate gene names after Cuffnorm in the RNA seq pipeline?
0
gravatar for shangqianwang
3.4 years ago by
shangqianwang0 wrote:

I use STAR to align the fastq file to generate the BAM, followed by Cuffquant, Cuffnorm to get fpkm table. But in that table, only ENSG symbol is listed. How should I know my gene names?

rna-seq • 1.2k views
ADD COMMENTlink modified 3.2 years ago by blackgore60 • written 3.4 years ago by shangqianwang0
0
gravatar for theobroma22
3.3 years ago by
theobroma221.1k
theobroma221.1k wrote:

BLAST the sequences.

ADD COMMENTlink written 3.3 years ago by theobroma221.1k
0
gravatar for blackgore
3.2 years ago by
blackgore60
Ireland
blackgore60 wrote:

Your ENSG labels are Ensembl Gene identifiers. You can query Ensembl's Biomart service to look up information such as gene identifiers, gene names and a lot more besides. Use your list of identifiers to filter the results to just those genes you want. Access Biomart here : http://www.ensembl.org/biomart/martview

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by blackgore60
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