I have a bunch of fast5 file as well as a refernce genome. I'm running a Win 7 Enterprise OS.
Embarrassing enough, I have no idea why neither works for me.
poretools fastq test_data/*.fast5
Error: unexpected symbol in "poretools fastq"
Moving to LAST, I am not sure if this can be run in Windows OS. Can someone answer this for me? Am I supposed to run the scripts from the command line (DOS), from a compiler of some sort? I followed the instructions I downloaded Cygwin, thinking the commands had to be run in UNIX, but had no success there too.
Truly appreciate some help to get me going here.