Question: what are the sources to analyze and visualize annotated fasta reads ?
1
gravatar for faizansaleem1992
2.8 years ago by
faizansaleem199240 wrote:

Hello, I have assembled and annotated my raw illumina sequences, and now I want to visualise and analyze my annotated fasta reads. Kindly mention some sources i.e softwares, web servers etc. except mg-rast.

ADD COMMENTlink modified 2.8 years ago by Abdul Rafay Khan1.0k • written 2.8 years ago by faizansaleem199240
1

What type of reads you have ? DNA or RNA

ADD REPLYlink written 2.8 years ago by Abdul Rafay Khan1.0k

I have assembled DNA reads in fasta format.

ADD REPLYlink written 2.8 years ago by faizansaleem199240

With what did you annotate the assembly? What is the aim of your visualization?

ADD REPLYlink written 2.8 years ago by WouterDeCoster41k

I have metagenomic data and want to get the taxonomic and functional annotation.

ADD REPLYlink written 2.8 years ago by faizansaleem199240
0
gravatar for Abdul Rafay Khan
2.8 years ago by
Karachi, PK
Abdul Rafay Khan1.0k wrote:

You need to map sequencing reads to a reference genome with Bowtie2.

ADD COMMENTlink written 2.8 years ago by Abdul Rafay Khan1.0k
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