Question: RNA seq datasets with multiple experimental factors
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gravatar for zamanys4
2.4 years ago by
zamanys410
zamanys410 wrote:

I am looking for RNA seq datasets with multiple experimental factors (in contrast with the usual two treatment comparisons), so that I can validate my method for differential expression analysis. I appreciate if you let me know of any such data.

ADD COMMENTlink modified 2.3 years ago by WouterDeCoster39k • written 2.4 years ago by zamanys410
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gravatar for craig
2.3 years ago by
craig50
craig50 wrote:

Let's see if Repositive can help you... Our platform has over 1.1 million human genomic datasets

I did a quick search for "RNA Seq" and unsurprisingly I got over 147,008 results! In case you are interested, you can see them all here: https://discover.repositive.io/datasets/search?query=RNA%20Seq

I tried to narrow it down by searching for "RNA Seq experinmental factors" and got 319 hits. https://discover.repositive.io/datasets/search?query=RNA%20Seq%20experimental%20factors

Might be best to let you take over though and filter a bit further. Just to let you know, you can browse and query all the Repositive data without an account, but you do need to create a FREE account to apply filters and use other cool features.

Hope it helps.

ADD COMMENTlink written 2.3 years ago by craig50

Stop leaving this spam-answers as a promotion for your tool. If you want to advertise, you can create a 'Tool' post explaining the value of it. This isn't the first that you got told this, so consider this your final warning.

ADD REPLYlink written 2.3 years ago by WouterDeCoster39k
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gravatar for WouterDeCoster
2.3 years ago by
Belgium
WouterDeCoster39k wrote:

If I understood your question correctly I think the data used by the bioconductor airway package can be of interest.

ADD COMMENTlink written 2.3 years ago by WouterDeCoster39k
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