Question: Known a gene sequence to find it's homology to yeast gene
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gravatar for newbiebio
22 months ago by
newbiebio80
newbiebio80 wrote:

Known one gene sequence, how to find if it's homology to any yeast gene? I used blast and under 'choose search set", there is organism, I chose yeast. Is that a right way? And What database should I choose?

blast • 508 views
ADD COMMENTlink written 22 months ago by newbiebio80
1

There are some yeast databases, for example:

http://www.yeastgenome.org/

For budding yeasts:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245034/

See also this post:

A: Do Anyone Kown Some Database About Yeast?

What kind of proteins you are interested in? This information may help to find what you need.

ADD REPLYlink modified 22 months ago • written 22 months ago by natasha.sernova3.1k

Thank you so much natasha. Actually, the gene is a lncRNA.

ADD REPLYlink written 22 months ago by newbiebio80

See these dbs:

http://lncrnadb.com/

http://lncrnator.ewha.ac.kr/index.htm

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013714/

ADD REPLYlink modified 22 months ago • written 22 months ago by natasha.sernova3.1k
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