Hi, sorry if this is a really basic question but I'm new to R and bioinformatics. After spending A LOT of time generating my RNAseq data from tuxedo suite, I need to compare 2 datasets generated by different methods. I am not sure what is the best method, but In papers I often see the usage of correlation scatter plots. Are there software packages or methods that can do this? My computer is basic (a laptop) and can crash when opens up too many large files.
Thank you for your advice and help