I am new to Bioinformatics, and I am unsure as to:
- I should locate genes in an area of interest?
- Determine what strain of E. coli that I may have?
The area of interest is called the LEE region in E. coli (determined by using the Center for Genomic Epidemiology webapge). I have done whole genome sequencing with this organism and obtained 6 contigs. The LEE area is in the first contig in the position between about 1 758 848 to about 1 790 939.
The assembly was done with SPADES and the annotation with PROKKA.
Thank you in advance,