I am new on this field of NGS so would like to know more.Guide me on the right path.
I think you should begin with something with GUI try first to read about this tools and the method it uses for phylogenetic analysis
here is an example of phylogenetic analysis using MEGA
lastly I would like you to read this chapter
Analysis of Next-generation Sequencing Data in Virology - Opportunities and Challenges
Thank u for the help
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