Question: How can I get the normalized counts matrix after doing TMM normalization using edgeR
0
gravatar for debitboro
3.4 years ago by
debitboro180
Belgium
debitboro180 wrote:

Hi biostars community,

How can I get the normalized counts matrix after doing TMM normalization using edgeR ? I saw a response in an older post that we can get this matrix by using cpm() function of edgeR package, but I think the CPM normalization method is different from the TMM method. is that right ?

thanks all

cpm tmm normalization • 3.4k views
ADD COMMENTlink modified 3.2 years ago by le233670 • written 3.4 years ago by debitboro180
1
gravatar for le2336
3.2 years ago by
le233670
United States
le233670 wrote:

See this discussion: https://support.bioconductor.org/p/77193

ADD COMMENTlink written 3.2 years ago by le233670
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