How can I get the normalized counts matrix after doing TMM normalization using edgeR
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4.8 years ago
debitboro ▴ 200

Hi biostars community,

How can I get the normalized counts matrix after doing TMM normalization using edgeR ? I saw a response in an older post that we can get this matrix by using cpm() function of edgeR package, but I think the CPM normalization method is different from the TMM method. is that right ?

thanks all

TMM CPM normalization • 5.0k views
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Entering edit mode
4.6 years ago
le2336 ▴ 70

See this discussion: https://support.bioconductor.org/p/77193

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