I have a list of Probe Ids that I would like to find differentially expressed genes for. What I have is a complete dataset from Illumina and I want to do differential expression on the subset of this data. I have already done differential expression for the complete dataset, but for the subset I want to do analysis on the differential expression on the probes from the complete dataset. Does anyone happen to know how I can either filter out the probe ids that I don't want or use the probe ids that I seek?
Thank you in advance !!!